Frommer-Yoshinari Group

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Publications (2017~)


    2025

  1. Muro K, Yamasaki A, Matsumoto M, Tanaka YK, Ogra Y, Fujiwara T, Yoshinari A, Takano J (2025) The polar-localized borate exporter BOR1 in tapetal cells supplies boron to developing pollen grains. Plant Physiol in press

    2. 2024

  2. Yoshinari A, Shimizu Y, Hosokawa T, Nakano A, Uemura T, Takano J (2024) Rapid vacuolar sorting of the borate transporter BOR1 requires the adaptor protein complex AP-4 in Arabidopsis. Plant Cell Physiol 65: 1801–1811.
  3. Yoshinari A.*, Isoda R., Yagi N, Sato Y, Lindeboom J.J., Ehrhardt D.W., Frommer W.B. & Nakamura M.* (2024) Near-infrared imaging of phytochrome-derived autofluorescence in plant nuclei. The Plant Journal, DOI: 10.1111/tpj.16699
  4. Loo E.P., Durán P., Pang T.Y., Westhoff P., Deng C., Durán C, Lercher M, Garrido-Oter R. & Frommer W.B. (2024) Sugar transporters spatially organize microbiota colonization along the longitudinal root axis of Arabidopsis. Cell Host Microbe., DOI: 10.1016/j.chom.2024.02.014
  5. Ejike J.O., Sadoine M., Shen Y., Ishikawa Y., Sunal E., Hänsch S., Hamacher A.B., Frommer W.B., Wudick M.M. & Kleist T. (2024) A Monochromatically excitable Green-Red Dual-fluorophore fusion incorporating a new large stokes shift fluorescent protein. Biochemistry, 63, 171-180 DOI: 10.1021/acs.biochem.3c00451

    6. 2023

  6. Arra Y., Auguy F., Stiebner M., Chéron S., Wudick M.M. Miras M., Schepler-Luu V., Köhler S., Cunnac, S., Frommer W.B. & Albar F. (2023) Rice Yellow Mottle Virus resistance by genome editing of the Oryza sativa L. ssp. Japonica nucleoporin gene OsCPR5.1 but not OsCPR5.2. Plant Biotechnol. J., DOI: 10.1111/pbi.14266
  7. Luu V.T., Sciallano C., Stiebner M., Ji C., Bouland G., Diallo A., Auguy F., Char S.N., Arra Y., Schenstnyi K., Buchholzer M., Loo E.P.I., Bilaro A., Lihepanyama D., Mkuya M., Murori R., Oliva R., Cunnac S., Yang B., Szurek B. & Frommer W.B. (2023) Genome editing of an African elite variety confers resistance against endemic and emerging Xanthomonas oryzae pv. oryzae strains. bioRxiv 10.1101/2022.11.20.517251 eLife, 12:e84864 DOI: 10.7554/eLife.84864
  8. Gombos S., Miras M., Howe V., Lin X., Pottier M., Jazemi N.S.K., Schladt M., Ejike J., Neumann U., Hänsch S., Kuttig F., Zhang Z., Dickmanns, M., Xu P., Stefan T., Baumeister W., Frommer W.B., Simon R. & Schulze W.X. (2023) A high confidence Physcomitrium patens plasmodesmata proteome by iterative scoring and validation reveals diversification of cell wall proteins during evolution. New Phytol. 238, 637-653 DOI: 10.1111/nph.18730

    9. 2022

  9. Isoda R., Palmai Z., Yoshinari A., Chen L-Q., Tama F., Frommer W.B. & Nakamura M. (2022) SWEET13 transport of sucrose, but not gibberellin, restores male fertility in Arabidopsis sweet13;14 Proc. Natl. Acad. Sci. USA, 119 (42) e2207558119. DOI: 10.1073/pnas.2207558119; 研究ハイライト: https://www.nagoya-u.ac.jp/researchinfo/result-en/2023/01/20230112-01.html
  10. Buchholzer M. & Frommer W.B. (2022) An increasing number of counters regulate genome editing in crops. New Phytol. DOI: 10.1111/nph.18333
  11. Kleist T., Lin W.I., Xu S., Mksaev G., Sadoine M., Haswell E.S., Frommer W.B. & Wudick M. (2022) OzTracs: Optical osmolality reporters engineered from mechanosensitive ion channels. Biomolecules 12, 787. DOI: 10.3390/biom12060787
  12. Nakamura M., Yagi N. & Hashimoto T. (2022) Finding a tight place to cut: how katanin is targeted to cellular severing sites. Quantitative Plant Biology, 3: e8, 1-7
  13. Wu L.B., Eom, J.S., Isoda R., Li C., Char S.N., Luo D., Luu V.T., Nakamura M., Yang B. & Frommer W.B. (2022). OsSWEET11b, a sixth leaf blight susceptibility gene involved in sugar transport-dependent male fertility. bioRxiv DOI: 10.1101/2021.08.21.457078; New Phytologist DOI: 10.1111/nph.18054
  14. Park J., Chavez T.M., Guistwhite J.A., Gwon S., Frommer W.B. & Cheung L.S. (2022) Development and quantitative analysis of a biosensor based on the Arabidopsis SWEET1 sugar transporter. Proc. Natl. Acad. Sci. USA 119, e2119183119 DOI: 10.1073/pnas.2119183119

    15. 2021

  15. Yoshinari A, Toda Y, Takano J (2021) GNOM‐dependent endocytosis maintains polar localisation of the borate exporter BOR1 in Arabidopsis. Biol Cell 113: 264–269.
  16. Yoshinari A, Hosokawa T, Beier MP, Oshima K, Ogino Y, Hori C, Takasuka TE, Fukao Y, Fujiwara T, Takano J (2021) Transport-coupled ubiquitination of the borate transporter BOR1 for its boron-dependent degradation. Plant Cell 33: 420–438.
  17. Castro-Rodríguez V., Kleist T.J., Gappel N.M., Okumoto S., Machado M., Denyer T., Timmermans M.C.P., Frommer W.B. & Wudick M.M. (2021) Sponging of glutamate at the outer plasma membrane surface reveals roles for glutamate in development. Plant J. 109: 664-674 online.
  18. Moe-Lange J., Gappel N., Ehrhardt D.W., Haswell E.S., Frommer W.B. & Kleist T. (2021) Interdependence of a mechanosensitive anion channel and glutamate receptors in distal sound signaling. Science Adv. 7: eabg4298. DOI: 10.1126/sciadv.abg4298
  19. Savadel S.D., Hartwig T., Turpin Z.M., Vera D.L., LungP., Sui X., Frommer W.B., Dennis J.H., Zhang J. & Bass H.W. (2021) The native cistome and sequence motif families of the maize ear. PLoS Genetics 17: e1009689. DOI: 10.1371/journal.pgen.1009689
  20. Sadoine M., Ishikawa Y., Kleist T.J., Wudick M.M., Nakamura M., Grossmann, G., Frommer W.B. & Ho C.H. (2021) Designs, applications and limitations of genetically encoded fluorescent sensors to explore plant biology – looking back and ahead. Plant Physiol. 187,485-503 DOI: 10.1093/plphys/kiab353
  21. Yagi N., Yoshinari A., Iwatate R., Frommer W.B. & Nakamura M. (2021) Advances in synthetic fluorescent probes labeling for live cell imaging in plants. Plant Cell Physiol. DOI: 10.1093/pcp/pcab104
  22. Kim J.Y., Symeonidi E., Pang T.Y., Denyer T., Weidauer D., Wudick M., Lercher M., Timmermans M. & Frommer W.B. (2021) Distinct identities of leaf phloem cells revealed by single cell transcriptomics. Plant Cell 33, 511-530 DOI: 10.1093/plcell/koaa060
  23. Bezrutczyk M., Zöllner N., Hartwig T., Lautwein T., Köhrer K., Frommer W.B. & Kim J.Y. (2021) Evidence for phloem loading via the abaxial bundle sheath cells in maize leaves. Plant Cell 33, 531-547 DOI: 10.1093/plcell/koaa055
  24. Yagi N., Kato T., Matsunaga S. Ehrhardt D.W., Nakamura M. & Hashimoto T. (2021) An anchoring complex recruits katanin for microtubule severing at the plant cortical nucleation sites. Nature Communications 12, 3687 DOI: 10.1038/s41467-021-24067-y
  25. Sadoine M., Reger M., Wong K.M. & Frommer W.B. (2021) Affinity series of genetically encoded high sensitivity Förster resonance energy transfer sensors for sucrose. ACS Biosensors 6, 1779-1784. doi: 10.1021/acssensors.0c02495
  26. Kim J.Y., Loo E., Frommer W.B. & Wudick M.W. (2021) Cellular export of sugars and amino acids: Role in feeding other cells and organisms. Plant Physiol. online. DOI: 10.1093/plphys/kiab228
  27. Prior M.J., Selvanayagam J., Kim J.G., Tomar M., Jonikas M.C., Mudgett M.B., Smeekens J., Hanson J. & Frommer W.B. (2021) Arabidopsis bZIP11 is a susceptibility factor during Pseudomonas syringae infection. Mol. Plant Microbe Interact. MPMI11200310R. DOI: 10.1094/MPMI-11-20-0310-R
  28. Isoda R., Yoshinari A., Ishikawa Y., Sadoine M., Simon R., Frommer W.B. & Nakamura M. (2021) Sensors for the quantification, localization and analysis of the dynamics of plant hormones. Plant J. 105, 542-557. DOI: 10.1111/tpj.15096
  29. Yoshinari A., Moe-Lange J., Kleist T.J., Cartwrighter H.N., Quint D.A., Ehrhardt D.W., Frommer W.B. & Nakamura M. (2021) Using genetically encoded fluorescent biosensors for quantitative in vivo imaging. Arabidopsis Protocols 2200, 303-322. DOI: 10.1007/978-1-0716-0880-7_14

    30. 2020

  30. Qi X, Yoshinari A, Bai P, Maes M, Zeng SM, Torii KU (2020) The manifold actions of signaling peptides on subcellular dynamics of a receptor specify stomatal cell fate. eLife 9: e58097.
  31. Nakamura M. & Hashimoto T. (2020) Mechanistic insights into plant chiral growth. Symmetry 12, 2056. DOI: 10.3390/sym12122056
  32. Luu V.T., Stiebner M., Maldonado P.M., Valdez Gutierrez S.P., Slamet-Luedin I.H. & Frommer W.B. (2020) Efficient Agrobacterium-mediated Transformation of the Elite–Indica Rice Variety Komboka. Bio-protocol 10, e3739. DOI: 10.21769/BioProtoc.3739
  33. Sadoine M., Castro-Rodríguez V., Poloczek T., Javot H., Sunal E., Wudick, M. & Frommer W.B. (2020) Affinity Purification of GO-Matryoshka Biosensors from E. coli for Quantitative Ratiometric Fluorescence Analyses. Bio-protocol 10, e3773. DOI: 10.21769/BioProtoc.3773
  34. Frommer W.B. & Itami K. (2020) The prospects of Excellence Initiatives in research: Key Ingredients for a Successful Academic Research Institute. EMBO Rep. 21, e51398. DOI: 10.15252/embr.202051398
  35. Iwatate R.J., Yoshinari A., Yagi N., Ogasawara H., Grzybowski M., Kamiya M., Taki M., Yamaguchi S., Frommer W.B. & Nakamura M. (2020) Covalent self-labeling of tagged proteins with chemical fluorescent dyes in BY-2 cells and Arabidopsis seedlings. The Plant Cell 32, 3081-3094. DOI: 10.1105/tpc.20.00439
  36. Schmidt S.M., Belisle M. & Frommer W.B. (2020) The evolving landscape around genome editing in agriculture: Many countries have exempted or move to exempt forms of genome editing from GMO regulation of crop plants. EMBO Rep., e50680. DOI: 10.15252/embr.202050680
  37. Peng Q., Cai Y., Lai E., Nakamura M., Liao L., Zheng B., Ogutu C., Cherono S. & Han Y. (2020) The sucrose transporter MdSUT4.1 participated in the regulation of fruit sugar accumulation in apple. BMC Plant Biol. 20, 191. DOI: 10.1186/s12870-020-02406-3

    38. 2019

  38. Yoshinari A, Hosokawa T, Amano T, Beier MP, Kunieda T, Shimada T, Hara-Nishimura I, Naito S, Takano J (2019) Polar localization of the borate exporter BOR1 requires AP2-dependent endocytosis. Plant Physiol 179: 1569–1580.
  39. Oliva R., Ji C., Atienza-Grande G., Huguet-Tapia J.C., Pérez-Quintéro A., Li T., Eom J.S., Li C., Nguyen H., Liu B., Auguy F., Scaliano C., Luu V.T., Dossa G.S., Cunnac S., Schmidt S.M., Slamet-Loedin I.H., Vera Cruz C., Szurek B., Frommer W.B., White F.F. & Yang B. (2019) Broad-spectrum resistance to bacterial blight in rice using genome editing. Nature Biotech. 37, 1344-1350. DOI: 10.1038/s41587-019-0267-z
  40. Eom J.S., Luo D., Atienza-Grande G., Yang J., Ji C., Luu V.T., Huguet-Tapia J.C., Liu B., Char S.N., Liu B., Nguyen H., Schmidt S.M., Szurek B., Vera Cruz C., White F.F., Oliva R., Yang B. & Frommer W.B. (2019) Diagnostic kit for rice blight resistance. Nature Biotech. 37, 1372-1379. DOI: 10.1038/s41587-019-0268-y
  41. Sasaki T., Tsutsumi M., Omoto K., Murata T., Yagi N., Nakamura M., Nemoto T., Hasebe M. & Oda Y. (2019) A novel katanin-tethering machinery accelerates cytokinesis. Curr. Biol. 29, 4060-4070. DOI: 10.1016/j.cub.2019.09.049.
  42. Lindeboom J.J., Nakamura M., Saltini M., Hibbel A., Walia A., Ketelaar T., Emons A.M.C., Sedbrook J.C., Kirik V., Mulder B.M. & Ehrhardt D.W. (2019) CLASP stabilization of plus ends created by severing promotes microtubule creation and reorientation. J. Cell Biol. 218, 190-205. DOI: 10.1083/jcb.201805047

    43. 2018

  43. Routray P, Li T, Yamasaki A, Yoshinari A, Takano J, Choi WG, Sams CE, Roberts DM (2018) Nodulin intrinsic protein 7; 1 is a tapetal boric acid channel involved in pollen cell wall formation. Plant Physiology 178: 1269–1283.
  44. Yoshinari A, Korbei B, Takano J (2018) TOL proteins mediate vacuolar sorting of the borate transporter BOR1 in Arabidopsis thaliana. Soil Sci Plant Nutr 64: 598–605.
  45. Beier MP, Obara M, Taniai A, Sawa Y, Ishizuka J, Yoshida H, Tomita N, Yamanaka T, Ishizuka Y, Kudo S, Yoshinari A, Takeuchi S, Kojima S, Yamaya T, Hayakawa T (2018) Lack of ACTPK 1, an STY kinase, enhances ammonium uptake and use, and promotes growth of rice seedlings under sufficient external ammonium. Plant J 93: 992–1006.
  46. Nakamura M. & Yagi N. (2018) 青色光に応答した微小管ダイナミクス BSJ-Review-9C, 120-129 「植物の柔軟な発生を支える細胞骨格ダイナミクス」
  47. Bezrutczyk M., Hartwig T., Horschman M., Char S.N., Yang J., Yang B., Frommer W.B. & Sosso D. (2018) Impaired phloaem loading in zmsweet13a,b,c sucrose transporter triple knock-out mutants in Zea mays. New Phytol. 218, 594-603
  48. Yang J., Luo D., Yang B., Frommer W.B. & Eom J.S. (2018) SWEET11 and SWEET15 as key players in seed filling in rice. New Phytol. 218, 604-615
  49. Nakamura M., Lindeboom J.J., Saltini M., Mulder B.M & Ehrhardt D.W. SPR2 protects minus ends to promote severing and reorientation of plant cortical microtubule arrays. J. Cell Bioi. 217, 915-927
  50. Bezrutczyk M., Yang J., Eom J.S., Prior M., Sosso D., Hartwig T., Szurek B., Olivia R., Vera-Cruz C., White F.F., Yang B. & Frommer W.B. (2018) Sugar flux and signaling in plant-microbe interactions. Plant J. 93, 675-685

    51. 2017

  51. Wang S, Yoshinari A, Shimada T, Hara-Nishimura I, Mitani-Ueno N, Ma JF, Naito S, Takano J (2017) Polar localization of the NIP5;1 boric acid channel is maintained by endocytosis and facilitates boron transport in Arabidopsis roots. Plant Cell 29: 824–842.
  52. Rizza A., Walia A., Lanquar V., Frommer W.B. & Jones A.M. (2017) Gibberellin gradients in elongating tissues stimulated by phytochrome interacting factors in hypocotyls. Nature Plants 3, 803-813 (PMID: 28970478).
  53. Ast C., Foret J., Oltrogge L.M., De Michele R., Kleist T.J., Ho C.H. & Frommer W.B. (2017) Ratiometric Matryoshka biosensors from a nested cassette of green- and orange-emitting fluorescent proteins. Nature Commun. 431 (http://rdcu.be/vAro) (PMID:28874729)
  54. Cox Jr. K.L., Meng F., Wilkins K.E., Li F., Wang P., Booher N.J., Chen L.Q., Zheng H., Gao Q., Zheng Y., Fei Z., Yu J.Z., Isakeit T., Wheeler T., Frommer W.B., He P., Bogdanove & Shan L. (2017) TAL effector-mediated induction of a SWEET sugar transporter confers susceptibility to bacterial blight of cotton. Nature Commun. 169, 96-107.e12 (PMID:28537271)
  55. Latorraca N., Fastman N., Venkatakrishnan A.J., Frommer W.B., Dror R. & Feng L. (2017) Mechanism of substrate translocation in an alternating access transporter. Cell 169, 96-107 (PMID: 28340354).
  56. Sugiyama A., Saida Y, Yoshimizu M, Takanashi K., Sosso D., Frommer W.B. & Yazaki K. (2016) Molecular characterization of LjSWEET3, a sucrose transporter in nodule of Lotus japonicus. Plant Cell Physiol. 58, 298-306

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