-
Visualizing the Functional Dynamics of P-Glycoprotein and Its Modulation by Elacridar via High-Speed Atomic Force Microscopy
Kanaoka, Yui; Hamaguchi-Suzuki, Norie; Nonaka, Yuto; Yamashita, Soichi; Miyashita, Osamu; Ito, Atsuyuki; Ogasawara, Satoshi; Tama, Florence; Murata, Takeshi; Uchihashi, Takayuki
Int. J. Mol. Sci., 2025, 27, 1
10.3390/ijms27010356 -
N-Heterocyclic Carbene Overlayers on Mild Steel
Laundry-Mottiar, Lila; Suduwella, Thilini Malsha; Senanayake, Waruni G. K.; Turnbull, Matthew J.; Juneau, Antoine; Kaur, Ekrupe; Aloisio, Mark D.; Selva, Thiago M. Guimaraes; Henderson, Jeffrey D.; Nie, Heng-Yong; et al.
Chem. Mat., 2025, 37, 1, 76-86
10.1021/acs.chemmater.4c01804 -
The cytokinin efflux transporter ABCC4 participates in Arabidopsis root system development
Uragami, Takuya; Kiba, Takatoshi; Kojima, Mikiko; Takebayashi, Yumiko; Tozawa, Yuzuru; Hayashi, Yuki; Kinoshita, Toshinori; Sakakibara, Hitoshi
Plant Physiol., 2025, 197, 1
10.1093/plphys/kiae628 -
Local peptide signalling induces stomatal closure under drought stress
Shimotohno, Akie; Matsubayashi, Yoshikatsu; Du, Yujuan; Senthilvadivel, Vajravijayan; Suzuki, Takamasa; Kato, Hiroe; Kesherwani, Manish; Kono, Masaru; Mishiro-Sato, Emi; Kano, Keiko; et al.
Nat. Commun., 2025, 17, 1
10.1038/s41467-025-66392-6 -
Large-Scale Modeling of Proton-Coupled Electron Transfer Based on Block-Localized Kohn-Sham Orbitals
Lampe, Lukas; Yanai, Takeshi; Neugebauer, Johannes
J. Chem. Theory Comput., 2025, 21, 24, 12545-12556
10.1021/acs.jctc.5c01287 -
Analytical nuclear gradients for second-order Mソller-Plesset perturbation theory using pair-natural orbitals based on localized virtual molecular orbitals
-
eIF2D promotes 40S ribosomal subunit recycling during intrinsic ribosome destabilization
Ichihara, Kazuya; Shiraishi, Taichi; Chadani, Yuhei; Kito, Yuki; Shiraishi, Chisa; Hirata, Mina; Takahashi, Yuta; Kobo, Akinao; Hatano, Atsushi; Matsumoto, Masaki; et al.
Nucleic Acids Res., 2025, 53, 22
10.1093/nar/gkaf1322 -
Targeting Cryptochromes in Chronic Diseases
-
TCP3-mediated regulation of cell expansion in Arabidopsis thaliana
Koyama, Tomotsugu; Kunieda, Tadashi; Toyonaga, Hiromi; Nobuhara, Mika; Mitsuda, Nobutaka; Soga, Kouichi; Ishida, Junko; Seki, Motoaki; Takahashi, Koji; Kinoshita, Toshinori; Bessho, Ayumu; Demura, Taku; Ohme-Takagi, Masaru
New Phytol., 2025, 248, 6, 2981-2995
10.1111/nph.70631 -
LeafGen: Structure-aware Leaf Image Generation for Annotation-free Leaf Instance Segmentation
Asada, Naoki; Liu, Xinpeng; Xu, Kanyu; Miyakawa, Ryohei; Yang, Yang; Santo, Hiroaki; Toda, Yosuke; Okura, Fumio
Plant Phenomics, 2025, 7, 4
10.1016/j.plaphe.2025.100092 -
ABA receptor isoforms differently regulate stomatal movements and generation of reactive oxygen species in ABA signaling in Arabidopsis guard cells
Yin, Ye; Hayashi, Yuki; Sirajam, Monira; Shaiek, Oumayma; Munemasa, Shintaro; Nakamura, Yoshimasa; Kinoshita, Toshinori; Murata, Yoshiyuki; Mori, Izumi C.
Plant Cell Physiol., 2025, 66, 12, 1811-1822
10.1093/pcp/pcaf102 -
PyGraSO: Analytical Nuclear Derivatives of Spin-Orbit Coupling for Intersystem Crossing Dynamics Simulations
Hagai, Masaya; Fujimoto, Kazuhiro J.; Yanai, Takeshi
J. Chem. Theory Comput., 2025, 21, 22, 11604-11619
10.1021/acs.jctc.5c01442 -
A simple and versatile plasma membrane staining method for visualizing living cell morphology in reproductive tissues across diverse plant species
Hanaki, Yuga; Suzuki, Hidemasa; Nakamura, Sohta; Nakagawa, Sakumi; Tada, Keigo; Matsumoto, Hikari; Kimata, Yusuke; Sato, Yoshikatsu; Ueda, Minako
Plant Methods, 2025, 21, 1
10.1186/s13007-025-01465-7 -
Protonation-Enhanced Energy Transfer in Xanthorhodopsin Kin4B8
Fujimoto, Kazuhiro J.; Tsuzuki, Yuta A.; Konno, Masae; Nagata, Takashi; Murakami, Rintaro; Inoue, Keiichi; Yanai, Takeshi
J. Phys. Chem. Lett., 2025, 16, 45, 11884-11892
10.1021/acs.jpclett.5c02898 -
Facile generation of ortho-quinodimethanes toward polycyclic compounds
Inagaki, Kazuya; Onozawa, Yuna; Fukuhara, Yuki; Yokogawa, Daisuke; Muto, Kei; Yamaguchi, Junichiro
Chem, 2025, 11, 11
10.1016/j.chempr.2025.102615 -
Mutual inhibition between EPFL2 and auxin extends the intervals of periodic leaf morphogenesis
Tameshige, Toshiaki; Tsuchida, Takeshi; Matsushita, Yuuki; Doll, Yuki; Maruyama, Kaisei; Agui, Takemoto; Aida, Mitsuhiro; Kasahara, Hiroyuki; Torii, Keiko U.; Uchida, Naoyuki; Fujimoto, Koichi; Ikeuchi, Momoko
Nat. Commun., 2025, 16, 1
10.1038/s41467-025-65792-y -
Single-Cell Fluorescence Analysis of Lipid Droplet Compositional Dynamics during Triacylglycerol Catabolism
Wang, Junwei; Kajiwara, Keiji; Kesherwani, Manish; Tama, Florence; Ohsaki, Yuki; Yamaguchi, Shigehiro; Taki, Masayasu
J. Am. Chem. Soc., 2025, 147, 45, 41514-41523
10.1021/jacs.5c11742 -
New Metabolites of Fairy Chemicals in Tea and Coffee: Methylated AHX and AOH
Abe, Takahiro; Ino, Sota; Choi, Jae-Hoon; Wu, Jing; Yokobori, Sae; Ouchi, Hitoshi; Takita, Ryo; Amaike, Kazuma; Itami, Kenichiro; Sato, Michio; Watanabe, Kenji; Hirai, Hirofumi; Kawagishi, Hirokazu
J. Agric. Food Chem., 2025, 73, 45, 28802-28810
10.1021/acs.jafc.5c05834 -
Inducible tag-free degradation of endogenous proteins with AlissAID and development of a photoactivable inducer
Ogawa, Yoshitaka; Nishimura, Kohei; Nambo, Masakazu; Tsuchiya, Yuichiro; Oka, Sanae; Fujimori, Toshihiko; Ichihara, Kazuya; Matsumoto, Akinobu; Obara, Keisuke; Kamura, Takumi
Commun. Biol., 2025, 8, 1
10.1038/s42003-025-08912-0 -
Electrooxidative Ring-Opening Transformation of Polycyclic Aromatic Hydrocarbons
Sakamoto, Ryosuke; Muto, Kei; Yamaguchi, Junichiro
Org. Lett., 2025, 27, 43, 11974-11978
10.1021/acs.orglett.5c03446 -
Companion cells with high florigen production express other small proteins and reveal a nitrogen-sensitive FT repressor
Takagi, Hiroshi; Ito, Shogo; Shim, Jae Sung; Kubota, Akane; Hempton, Andrew K.; Lee, Nayoung; Suzuki, Takamasa; Wong, Jared S.; Yang, Chansie; Nolan, Christine T.; et al.
eLife, 2025, 14
10.7554/eLife.102529; 10.7554/eLife.102529.3.sa1; 10.7554/eLife.102529.3.sa2; 10.7554/eLife.102529.3.sa3 -
Seeded control of symmetry-directed diverse chiral ケ-stacked benzothiadiazole assemblies with leucine-based diamide units
Yamada, Saeko; Inai, Naoto; Ogi, Soichiro; Yanai, Takeshi; Yamaguchi, Shigehiro
Chem. Commun., 2025, 61, 87, 16981-16984
10.1039/d5cc05008a -
Synthesis, Structures, and Properties of Polybenzo[n]spirenes with Carbon-Based Polyspiroconjugation
Hasebe, Kumpei; Itami, Kenichiro; Ito, Hideto
Org. Lett., 2025, 27, 42, 11832-11836
10.1021/acs.orglett.5c03654 -
Visualizing the chronicle of multiple cell fates using a near-IR dual-RNA/DNA-targeting probe
Sutrisno, Linawati; Richards, Gary J.; Evans, Jack D.; Matsumoto, Michio; Li, Xianglan; Uto, Koichiro; Hill, Jonathan P.; Taki, Masayasu; Yamaguchi, Shigehiro; Ariga, Katsuhiko
Sci. Adv., 2025, 11, 43
10.1126/sciadv.adz6633 -
Making non-emissive [6]cycloparaphenylene fluorescent by simple multiple methyl substitution
Kato, Tomoki; Imoto, Daiki; Yagi, Akiko; Itami, Kenichiro
Chem. Sci., 2025, 16, 40, 18952-18958
10.1039/d5sc04694g -
_-Fluorovinylsulfonamide as a Highly Reactivity- and Structure-Tunable Electrophile for Covalent Targeting of Proteins
Watanabe, Shunsuke; Tokunaga, Keisuke; Tanaka, Yudai; Hirose, Yuya; Mishiro-Sato, Emi; Kano, Keiko; Sasaki-Tabata, Kaori; Kato, Yuri; Nishida, Motohiro; Shindo, Naoya; Ojida, Akio
J. Am. Chem. Soc., 2025, 147, 41, 37065-37078
10.1021/jacs.5c07422 -
Tuning the surface chemistry of NHC-protected Au13 nanoclusters via a robust amide coupling procedure
Laluk, Andrew L. D. M.; Buschmann, Dennis A.; Takano, Shinjiro; Sullivan, Angus I.; Aminfar, Parimah; Stamplecoskie, Kevin; Tsukuda, Tatsuya; Crudden, Cathleen M.
Chem. Sci., 2025, 16, 39, 18278-18285
10.1039/d5sc02951a -
Assessment of the time correlation function-based approach for absorption spectrum calculations using time-dependent density functional theory and molecular dynamics simulations
Sendo, Shion; Fujimoto, Kazuhiro J.; Miyashita, Tomoya; Saito, Shinji; Yanai, Takeshi
J. Chem. Phys., 2025, 163, 13
10.1063/5.0281605 -
Reversible Mechanical Interlocking via Stimuli-Triggered Nonhomeomorphic Topology Transformation Enables Highly Efficient Rotaxane Synthesis
Xiao, Chunlin; Li, Xue; Okamoto, Naohiro; Kobayashi, Yuichiro; Nishiuchi, Tomohiko; Tani, Yosuke; Yamaguchi, Hiroyasu
Angew. Chem.-Int. Edit., 2025, 64, 44
10.1002/anie.202513783 -
Flexible Fitting to Infer Atomistic-Precision Models of Large-Amplitude Conformational Dynamics in Biomolecules from High-Speed Atomic Force Microscopy Imaging
Amyot, Romain; Miyashita, Osamu; Wu, Xuan; Takeda, Kazusa; Kodera, Noriyuki; Konno, Hiroki; Tama, Florence; Flechsig, Holger
ACS Nano, 2025, 19, 38, 34065-34079
10.1021/acsnano.5c10073